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Characterisation of genetic variation in the European pig to facilitate the maintenance and exploitation of biodiversity

Microsatellite markers selected for the project (including those selected in PiGMaP sets I, II and III) -

sorted by set and dye
sorted by chromosome

Microsatellite markers selected for the project - sorted by set and dye

Set Number	Microsatellite	Dye	Chromosomal location	Size minimum	Size maximum	PCR Temperature	Rothschild Set
I	SW936	F	15	80	117	55^oC	I/II
	SW911	F	9p	153	177	55^oC	-
	S0355	F	15	243	277	55^oC	-

	SW24	T	17	96	121	55^oC	I/II
	SW632	T	7q	159	180	55^oC	-
	S0068	T	13	211	260	55^oC	-

	S0215	H	13	135	169	55^oC	-
	S0101	H	7q	197	216	55^oC	-
	CGA	H	1p	250	320	55^oC	-

II	SW122	F	6q	110	122	55^oC	-
	S0226	F	2q	181	205	55^oC	-
	S0090	F	12q	244	251	55^oC	-

	S0178	T	8q	110	124	55^oC	-
	S0218	T	Xq	164	184	55^oC	I/II
	S0228	T	6q	222	249	55^oC	-

	SW951	H	10q	125	133	55^oC	-
	S0225	H	8q	170	196	55^oC	-
	S0227	H	4p	231	256	55^oC	-

III	SW72	F	3p	100	116	55^oC	-
	S0155	F	1q	150	166	55^oC	-
	IGFI	F	5q	197	209	60^oC	-

	SW240	T	2p	96	115	55^oC	-
	S0386	T	11q	156	174	50^oC	-
	S0005	T	5q	205	248	55^oC	-

	S0026	H	16	92	106	55^oC	-
	SW857	H	14	144	160	55^oC	-
	S0002	H	3q	190	216	55^oC	-

IV	S0025	F	7p	104	120	55^oC	I/II
	SW787	F	18	153	165	55^oC	I/II
	SW902	F	3q	195	214	55^oC	I/II

	SW174	T	9q	123	133	55^oC	I/II
	S0217	T	4q	145	165	55^oC	III
	S0097	T	4q	208	248	55^oC	I/II

	SW2008	H	11p	95	105	55^oC	III
	S0070	H	10q	265	299	55^oC	I/II

V	SW1023	F	18	84	117	55^oC	I/II
	SWR1004	F	17	147	167	60^oC	I/II
	S0301	F	4p	254	266	55^oC	I/II

	SW295	T	14	109	139	60^oC	I/II
	SW1111	T	15	165	183	60^oC	I/II
	SW2406	T	6p	220	256	55^oC	III

	SW2476	H	Xq	88	106	55^oC	III
	SW742	H	16	193	224	55^oC	III

VI	SW769	F	13	106	140	55^oC	I/II
	SW830	F	10p	176	205	50^oC	I/II

	SW1828	T	1q	95	105	55^oC	I/II
	S0143	T	12p	148	166	55^oC	I/II
	SWR1941	T	13	202	218	55^oC	IV

	SW2410	H	8p	108	124	55^oC	III
	SW1067	H	6q	144	175	55^oC	VI

Microsatellite markers selected for the project - sorted by chromosome

Microsatellite Chromosomal location Set Number Dye Number of alleles Distance (cM)

CGA 1p I H 12 -

S0155 1q III F 6 45

SW1828 1q VI T 6 24

SW240 2p III T 8 -

S0226 2q II F 9 20

SW72 3p III F 8 -

SW902 3q IV F 7 40

S0002 3q III H 7 45

S0227 4p II H 10 -

S0301 4p V F 6 20

S0217 4q IV T 5 45

S0097 4q IV T 8 50

S0005 5q III T 10 -

IGFI 5q III F 7 30

SW2406 6p V T 7 -

SW1067 6q VI H 7 50

SW122 6q II F 10 15

S0228 6q II T 12 20

S0025 7p IV F 9 -

SW632 7q I T 9 100

S0101 7q I H 6 30

SW2410 8p VI H 6 -

S0225 8q II H 8 82

S0178 8q II T 4 45

SW911 9p I F 9 -

SW174 9q IV T 5 90

SW830 10p VI F 7 -

S0070 10q IV H 7 60

SW951 10q II H 5 35

SW2008 11p IV H 6 -

S0386 11q III T 10 55

S0143 12p VI T 5 -

S0090 12q II F 4 75

SWR1941 13 VI T 7 -

S0068 13 I T 10 45

SW769 13 VI F 7 55

S0215 13 I H 9 5

SW857 14 III H 6 -

SW295 14 V T 8 30

S0355 15 I F 14 -

SW1111 15 V T 6 25

SW936 15 I F 13 50

SW742 16 V H 9 -

S0026 16 III H 8 30

SWR1004 17 V F 5 -

SW24 17 I T 8 5

SW1023 18 V F 5 -

SW787 18 IV F 8 25

SW2476 Xq V H 5 -

S0218 Xq II T 8 35

Roslin Institute, Roslin BioCentre, Midlothian EH25 9PS Scotland UK
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