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Markers

X chromosome

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Framework markers
Marker ID
Primer 1
Primer 2
Retention Frequency
Gene Name
F2
AGLA257
AGCTAGATTAACACCAAAA
AATTCCATGTATCAGTTGT
0.585
 
F2
BL1098
CCACAACTTCCAGAAGCCTC
CAGAAACCACCCAAACTAACC
0.468
 
 
BM2713
CTCCTAAGTCCAGGAAGCCC
TGAATACCTGTTTCCAGCCC
0.5
 
 
BM4606
TCTATACTGACACAAGCCCAGG
AAAGTCCTTCAGGCAGAAAAG
0.106
 
F1
BM6017
TCTTCTGTTTTCCTCCATCCC
GGAAACTAGCTTATGCTGTGGG
0.362
 
 
BM7144
AGGCCCACTGTTTCCTACCT
GCCATACAACAATGTGAATTAGC
0.106
 
F2
BM9208
TGCAGCATCACACGTTTACC
TTCTGGCAGCATCTTTCTTG
0.436
 
 
BMC6021
AGGCCAAGTGAAGAGGTCAC
TCTGCTCCAGCTTTCCAGTA
0.181
 
 
BMS1008
CCGATATGTATAGTGTTCCCCT
CCTGGTCAAAAAATTAGAAGGA
0.484
 
 
BMS1616
CAGTGTGTATAGCATGATTCCG
AGTTGGTCTGCATTCATACATTAA
0.511
 
 
BMS1820
CACAAAGAATCAGACATGATGG
ACTGTGTACTGGAGTGGAAAGG
0.309
 
 
BMS2083
CAAACCTCTGGATCACTTAAGC
CCAGAGAAACAGAATCAAAAGTG
0.165
 
F2
BMS2152
AGTGGCCTCTAAGCAATATGAA
TGTATTCACACCTCTGTGTCTGA
0.43
 
F2
BMS2227
AAATTTGCTATTTCTCTAGACATGATT
ATGGTTATTTTCATAATCAGAGGTATG
0.511
 
 
BMS2592
GAGCTGTTCCACATGCAGAT
GATGGAGGAGGAATAAGACAGG
0.118
 
 
BMS2722
TAGAGCCCACGTGAAAAATG
GCAGGCTTTCACAAATACACA
0.16
 
BMS397
GCCACAATACTACCACCGC
AAATAAGCATTTTGAACAGAGACTG
0.181
 
 
BMS417
TGTTAGCATTATTCCCACATGC
AGGGTGGTAAGCAGCAAATG
0.351
 
 
BMS500
GGGGAGCCAAGATATGGAAG
CCATGTTGTCGAGCAATGAC
0.117
 
 
BMS513
TTCTTACATGACATCCTGGGA
TGAATCTAGCATCAATGGTACTTT
0.181
 
F1
BMS631
TTTCCACCCTCAGCTAAAGTG
AAATGACAGGTGTCTTGGGC
0.333
 
 
BMS811
AAAGCTCTCATAAACCAGCACA
CAAATTTAGGCCCCTGTAGC
0.638
 
 
BMS903
TGCTCAGAAATTGAAGGTGG
AAGCTTCCTCATACCTCACTCC
0.457
 
 
BMS911
TGGCCAATCTCTGCTATAGG
TTTCCCTGTATTTTCAGGTCC
0.213
 
F2
BMS938
CATTTGTATTAGTCAGAGTCCTCCA
CTATTGTAACTGTGTGCCAATTCC
0.585
 
 
BMS960
TGTAAATAGCTCCCCTCCTGC
CTAGCAATTTGTTGTTCATGGC
0.415
 
F1
ETH123
GTCAGACATGACTGAGTGAC
CTGCTATAGAGGTATAGGAGG
0.277
 
 
HAUT37
TTACAATAGCAAGACTTACACTT
TCTTCACTTTCTGCCATTAGG
0.202
 
 
HEL26(X?)
GCTTCTCTAAACAGGTGCCTT
AGGCTACAGTCCATGGGATT
0.467
 
 
HUJ121
GGCTGGTCTCCATGGGAAGC
GGTGGGCTACAGTCCACGGG
0.426
 
 
HUMm2-21
ACCAAGGTTGAGAATGGTGC
TCCATAGACAGAGAAGCCTGG
0.398
 
 
IDVGA82
ACAATGATGAGGGGCTCTG
GGCAAACCATTCCAGTATTC
0.191
 
 
INRA030(X)
ATGCAAATGTGCTACATCACCTAT
CCCAACTCTCACATCCAGAT
0.362
 
 
R314
CAAAGTATACAGGTCCCTGTTCG
GTCTCAATCAGGACCCAATGG
0.301
 
 
RM350
TGTGCCAGATGTGGTCCTAG
AGTTCATGATTGTGCAGACCC
0.255
 
 
XBM111
TGAAAGGGGATGACTTACAACC
AATCGCAAAGAGTGGGACAC
0.462
 
 
XBM16
AGGATAATTTGCTCTGTGCCC
ATGGCAATATGAGGAGTTGC
0.234
 
 
XBM24
TTACCACTGAGCCACCTGG
ATGATGCTTCTGTCAAGAGGTT
0.17
 
F1
XBM411
AGTCACGAAAATGCCACATG
GTTCAGGATTACCACCATAGCC
0.37
 
 
XBM521
CCTTCAGGTCTCAGCTCACC
AGTGCTATGAAGAAGACCAGGG
0.5
 
 
XBM7
CTGTATTAGAGTTCCCTGGAGAAA
GCCAACATGCCCTGTAGAAT
0.511
 
 
XBM701
TTCCCCTTGAAATCATCTGG
TCCAAGTTACCAAAATTGACCC
0.446
 
 
XBM73
CGATGTCAGCAACAATCCC
TTGGTGTGTGCTTCTGTTCTG
0.174
 
 
XBM84
TCAGGTGAATACTTTCCCACG
TCCTTGTGTCCCTTTAGTTTTG
0.117
 
Not included in map
 
HPRT*
GATGATGAACCAGGTTATGACC
CTACAGTCATAGGAATGGATC
0.311
hypoxanthine-guanine phosphoribosyltransferase
 
URB010
CTGGAGCATAACACGATCAGGAC
CCACTCCTTCTTTCAGCA
0.806
 
 
XBM19
TGGCAACCCATTCCAGTATT
GCAAACTATCTCACCTCCTTCA
0.28
 

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© Roslin Institute 2002

Dr John Williams
0131 527 4200