COMRAD - comparative radiation hybrid mapping
 
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Markers

BTA 9

Framework markers
Marker ID
Primer 1
Primer 2
Retention Frequency
Gene Name
F1
BM1227
CACCAGTGATATTGGCTTATGG
GGAAGAAACACTTCCAAACCC
0.245
 
F2
BM1545
CTTCCAAGGGATTCTTGCC
AATGGGCGAATTTTGTTCAG
0.213
 
F1
BM2504
CTCCCATCCCAAACACAGAC
CAGCTTTCCATCCCCTTTC
0.261
 
F2
BM4204
GGGTAGGAGCTTTTGTAGGTG
GCCATCACCCTTCTCTTATATG
0.213
 
 
BM4208
TCAGTACACTGGCCACCATG
CACTGCATGCTTTTCCAAAC
0.138
 
 
BM4627
TGAAGCAACTGGGTATGCAC
AGGACAAGCTGGCTTCTGAG
0.181
 
 
BM6436
AAAGACTGCTTGCCTGAAGC
CAACCAGTGATGCTGTACTCTG
0.149
 
 
BM6449
TATGTCCAGCAGCCCCTAAC
ACTACAGAGCAACCATGCTGG
0.22
 
 
BM7209
TTTTCTGCTCATGCTTCAGTG
GCAGGCTATAGTCCATGACATC
0.138
 
 
BM7234
TTCACTGATTGTCATTCCCTAGA
TAAGCAAATAAATGGTGCTAGTCA
0.149
 
 
BM757
TTGAGCCACCAAGGAACC
TGGAAACAATGTAAACCTGGG
0.287
 
F2
BMS1148
TTAAATGGGACCAGATAAATAGGA
AAATGAGAACCAGATAAGCCTAAA
0.149
 
 
BMS1234
CACCATTCATTCTTGTTTTGG
GCACCTTTCACAAGTAGAACTGA
0.237
 
 
BMS1267
TTCTGAATTTGATTCCCAACA
ACTGTTTCCTTAAAAGCTTCCC
0.207
 
 
BMS1290
TTGGCACTTACTACCTCATATGTT
TTTTCTGGATGTTGAGCCTATT
0.154
 
F3
BMS1319
TCTCTGTGTCCTCACAAAGGG
ACATGTGTGCGTGCAAGTG
0.202
 
 
BMS1522
AGAAAATGATGGCAGGAACC
AGTCCATGGTGTTGAAAGAGTC
0.217
 
F1
BMS1694
ATGGACCTTCAAGAACAGAAGC
CTAACAACACAACCCTTCCTCC
0.29
 
 
BMS1724
GACTTGCCCCAATCCTACTG
ATTTCAGGTTTGTTGGTTCCC
0.149
 
 
BMS1943
ATCAGTCGTTCCCAGAATGTC
TTGATATCCTCTCTGTCAAGCC
0.237
 
F3
BMS1967
GGGCAGATGTGAGTAATTTTCC
AACTGAGCTGTATGGTGGACG
0.25
 
F3
BMS2063
AAGGGGAGGAGCTTAAGTAGG
GAGAATCAGACATGAATGAGTACG
0.097
 
 
BMS2094
GGCTGTCCTGAGTCTTGTCTG
AAAATCGGAACCAAACATTCC
0.341
 
 
BMS2151
CCATTAAGAGGAAATTGTGTTCA
ATGGAGTCACTGAAAGGTACTGA
0.383
 
 
BMS2177
TTGCTAATGCAAATGTGTATGTG
GATCATGTCATCTGTGAAAAAAGA
0.301
 
 
BMS2251
AACGGCTTTCACTTTCTTGC
CTGGGTGAACAAATGGGC
0.183
 
 
BMS2295
GCTCTGGTGACCCAGGTG
CTGGCAGGAGATGAGAGGAG
0.138
 
 
BMS2377
AACAGAGGAACCTGCCAGC
ACTCCCTGGATGTGAATACTGG
0.138
 
 
BMS2753
TCAAAAAGTTGGACATGACTGA
AGGTTTTCAAATGAGAGACTTTTC
0.096
 
F3
BMS2819
GCTCACAGGTTCTGAGGACTC
AACTTGAAGAAGGAATGCTGAG
0.085
 
F2
BMS345
AGGTGAATAAACTTCAAGGAGAGC
ATACACTTGCACATCAACCCA
0.172
 
 
BMS425
AAACCTGCCAAAGGAAACAC
TATCTCCTGCTCCCATCTTTC
0.234
 
 
BMS434
GTTTCTCCTTTCCCCTCTGA
TGACTTCAGGGAATAAGTTCCA
0.196
 
 
BMS47
CAGAGAGCGTCTGTGGAGG
TCTTGTCTGGCTGGATGATG
0.242
 
 
BMS555
GGAAAGAGTAGGTGATTCCCTG
ATTTAATTGTCATCCCAGGTGA
0.118
 
F2
CSSM025
GTAGTTATCAAAATAAGAATGCTT
TATGTTTTCCTTTTGGTTGAATAG
0.237
 
F3
CSSM056
ATTTGACAGTTGAGGCATTGCTGA
CAGTATCTCACTGACCCAGGTTTC
0.138
 
F3
DIK096
GCTGTAATGAGGCACCACAATA
GCTTGCAGACTCCCTCTCTC
0.096
 
F1
ETH225
GATCACCTTGCCACTATTTCCT
ACATGACAGCCAGCTGCTACT
0.255
 
F1
ILSTS037
CGAAGAAGGACGCCTACAAG
GATATTCGGGGAAACCCACT
0.209
 
 
ILSTS084
CTCAGGGGACAATCACAAGC
CAAACCTACTAAGATGAAGTCC
0.196
 
F3
ILSTS088
CATGCGGAATGTTCTTCACG
ACATGACCACTGGAAAAACC
0.16
 
 
INRA084
CTAAAGCTTTCCTCCATCTC
CCTGGTGATGTTTGGATGTC
0.096
 
F1
INRA136
ACTCCAGTGTTTATTGCAGCG
AGACCTTTCCTCTTTCTCAGGG
0.204
 
 
INRA144
TCGGTGTGGGAGGTGACTACAT
TGCTGGTGGGCTCCGTCACC
0.108
 
 
MILSTS076
TGGCAGGCAGGTTCTTTAGC
TTCAGATTCACTCAGACAGC
0.22
 
 
MM12E6
CAAGACAGGTGTTTCAATCT
ATCGACTCTGGGGATGATGT
0.138
 
F1
RM042
CCACCATTGAAGCACGTATAGCT
CAGCTTAGCGACTAAACAACAAAT
0.258
 
F2
TGLA261
CAAATCTCATTCTCTCCAGAAGGC
CCAACTTATATTAGGCACAATGTCC
0.176
 
 
TGLA73
GAGAATCACCTAGAGAGGCA
CTTTCTCTTTAAATTCTATATGGT
0.117
 
F3
URB024
GACACCACCTAGCAACTGAACA
CTGAAGCATCTGAATACTCTCC
0.14
 
F3
URB028
GTATCAGTCTCTCTCAACAACCTT
CATGTCAGGCATCAGTCCATAG
0.138
 
F2
UWCA9
CCTTCTCTGAATTTTTGTTGAAAGC
GGACAGAAGTGAGTGACTGAGA
0.194
 
Not included in map
 
BMC701
TGATTTCCTTTTCCAGACTTCC
ATGGGTTCCAGCACAATTTT
0.323
 
 
BMS817
TGGGAAAGTTGGCAAATG
TTGTGATACCTGAAATGGTCAA
0.183
 

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© Roslin Institute 2002

Dr John Williams
0131 527 4200