Framework markers |
Marker ID |
Primer 1 |
Primer 2 |
Retention Frequency |
Gene Name |
| |
AP2B* |
GCAGTGTGCTCCCATCTCTT |
TCATGGAGCCAGAGAGGTGA |
0.096 |
|
F1 |
BAK1BCL2 |
TATGCACAGGGGAACTGTGA |
TGGGGGTTGCAGTTTATTTT |
0.398 |
|
F2 |
BM1258 |
GTATGTATTTTTCCCACCCTGC |
GAGTCAGACATGACTGAGCCTG |
0.319 |
|
F3 |
BM1443 |
AATAAAGAGACATGGTCACCGG |
TCGAGGTGTGGGAGGAAG |
0.266 |
|
F2 |
BM1815 |
AGAGGATGATGGCCTCCTG |
CAAGGAGACAAGTCAAGTTCCC |
0.266 |
|
| |
BM1818 |
AGCTGGGAATATAACCAAAGG |
AGTGCTTTCAAGGTCCATGC |
0.185 |
|
F3 |
BM1905 |
GTCCATGGGTTCACAAAGAG |
ACGCCTGCTGATGCTGTAG |
0.202 |
|
F1 |
BM47 |
ACAGGAAGGAGAAGGGGAAG |
CCGGGGTCACATGACTCTG |
0.287 |
|
F3 |
BMS2269 |
AATTCACCCACTGCCAGC |
TGAAATATGCTTACCTCCCACC |
0.202 |
|
| |
BMS2275 |
GGGGATATCGAGAGGATGTG |
ATCCTCCAGCCTACACCTAGC |
0.16 |
|
F3 |
BMS4036 |
GCTCCCAATAAGAAGGTCCC |
GGATCGAGACTTAAGAACACGC |
0.16 |
|
F2 |
BMS468 |
GTTAAGCAGAGGGTTTCCCC |
TATTCCCAGGTGCTCTGAGG |
0.266 |
|
| |
Bola-A* |
GATGAAGCATCACTCAGTCCC |
GGCTCTGATGTGTCTCTCACG |
0.287 |
Bovine
lymphocyte antigen A |
| |
BOLADRBP* |
ATCCTCTCTCTGCAGCACATTTCCT |
CGCGCTCACCTCGCCGCTG |
0.191 |
Bovine
lymphocyte antigen DR beta subunit |
F3 |
BP34 |
ATTTGAAAAGGCCTGTGAGG |
TAGCTTGACTCCAACCTCTTCC |
0.213 |
|
| |
BTN* |
GAGGCATTTTCAGGCATCAT |
GTGGGAGCCTGGATAAGACA |
0.192 |
butyrophilin |
| |
C4* |
GGAGGGTTACCGGATGAAAT |
ATCCAGCTGTTCGAGTCCAG |
0.333 |
complement
component 4 |
| |
CI0BT528B |
TGCTTCTGTAAATGACGTTCCG |
AACTCCAGGAGTTGGTGATGG |
0.298 |
|
| |
CMAH* |
AGGCTGCCTATGAAGGTTGA |
CACTTCAGGCAGTGGAAACA |
0.138 |
cytidine monophosphate-N-acetylneuraminic acid hydroxylase |
F3 |
CSSM024 |
GAGGATGCAGAACCAGGCGTTAGA |
GGTCGAAGAGAGTCAGACATGACT |
0.255 |
|
| |
CYP21* |
GGAGGGTTACAGTCCATGAGTTTG |
TCGCGATCCAACTCCTCCTGAAG |
0.298 |
cytochrome
P450, subfamily XXI [steroid 21-hydroxylase] |
| |
CYP21A2* |
GGAGGGTTACAGTCCATGAGTTT |
TCGCGATCCAACTCCTCCTGAAG |
0.33 |
cytochrome
P450, subfamily XXI [steroid 21-hydroxylase] |
F1 |
DMA* |
CACACAATGTACTGCCAGGA |
CAGTGTGAACACCTGAACGA |
0.33 |
major
histocompatibility complex, class II, DM alpha-chain,
expressed |
| |
DRB3* |
GAGAGTTTCACTGTGCAG |
CCAGAGTGAGTGAAGTATCTCT |
0.202 |
major
histocompatibility complex, class II, DR beta 3 |
F3 |
F13A1* |
CAAGGAGAGGTGGGATAGCA |
AGATCCCTTGTGGGGTCATA |
0.351 |
coagulation
factor XIII, A1 polypeptide [blood coagulation factor
XIII A1 subunit] |
| |
GSTA2* |
CCTCCCATGGATGAGAAAAT |
TCTGAAACACATTCTAGGAGGAGA |
0.163 |
glutathione
S-transferase A2 |
| |
HSPA1* |
GGATTGCTCATGTTTGTTATGG |
CTTGGAAGTAAACAGAAACGGG |
0.247 |
heat
shock 70 kD protein 1 |
| |
HSPA1B* |
CAAGATCACCATCACCAACG |
CAGCTCCTTCCTCTTGTGCT |
0.298 |
heat
shock 70 kD protein 2 |
F1 |
INRA064 |
GCCCACAGCGCTCTCTAC |
CTGAAAGCAGAATGAGGTGC |
0.33 |
|
| |
INRA132 |
AACATTTCAGCTGATGGTGGC |
TTCTGTTTTGAGTGGTAAGCTG |
0.312 |
|
F1 |
LMP7* |
GAATGGTTCTGTAGGATCTC |
CCTTCTCTCTAATCTCAAGC |
0.362 |
proteasome
subunit, beta type 8 [prosome, macropain] [large multifunctional
protease 7] |
| |
MCM3* |
TGGTCTGCATCGATGAGTTT |
CCAATGGCAGTAGCAAGATG |
0.223 |
??? |
| |
MOG* |
CAGCTGCTAAAAGAGACCATTG |
TTTCAATTCCATCGCTGCCTCC |
0.217 |
myelin oligodendrocyte glycoprotein |
F1 |
PIM1* |
GATCCACTCTGGAGGGCTAT |
CTGCTCAAGGACACCGTCTA |
0.29 |
pim-1 oncogene |
| |
POU5F1POU |
TCGGACACAACTGAAGCAAC |
TGAGCCAGATCAGTCCTGTG |
0.287 |
|
F2 |
RM033 |
GCTCATTCTCCTGGGATGCAGA |
GCTCCTTTAGTTTTCTTGTGGGAG |
0.181 |
|
F2 |
TNF* |
CAGGCATAAACCAGGATGTCC |
GCGGCAGTGGCAGCGTGGCAG |
0.266 |
tumor
necrosis factor, alpha [cachectin] |
| |
TNFA* |
TCTCAAGCCTCAAGTAACAAGC |
ATGAGGTAAAGCCCGTCAGC |
0.293 |
tumor
necrosis factor, alpha [cachectin] |
| |
TNFe* |
AGAAGACAGAGGCAGGTCCA |
AAGAATCCCTTCTCCCTCCA |
0.266 |
??? |
| |
TNH* |
|
|
0.223 |
|
F2 |
UWCA1 |
AGAGTGTCTTATAATTAGCCAGGAAG |
AACTCTTTCAGTTGGTTCCTGT |
0.298 |
|
F2 |
VEGF* |
GATGTGACAAGCCGAGGC |
GGATTCAGGATTGTTCTGTCG |
0.266 |
vascular endothelial growth factor |
Not
included in map |
| |
CSH1* |
AGCCCTGTTGAGGTTGGTTA |
CGAATCCCTGTGTAGGCAGT |
0.181 |
placental lactogen |
| |
CSNK2B* |
CGGTTTCAAGATCCATCCAATG |
TTCCCACCACAATAACGACTCC |
0.356 |
casein
kinase 2, beta polypeptide |
| |
MLN* |
CAGCAGAGGTCAGAGGAGGT |
GGGAGAGGGTGTTTTCCTTC |
0.348 |
motilin |
| |
PRL* |
GGAAAGTGAACATGACTGTCTAG |
GCCCTCTCTTCTACAATGAACAC |
0.191 |
prolactin |
| |
RDS* |
CTGCATCCAGTACCAGCTCA |
AGAAAGGCCTTCCAGGTCTC |
0.483 |
retinal degeneration, slow [human : retinitis pigmentosa
7] |
| |
RM002 |
AGCAATGTCAAACATTGCTCC |
TCCATCTTTACAACTTTTGAATC |
0.086 |
|
| |
SFRS3* |
TGGAACAGTGACACAAAGGTG |
TTTCCAGCTGGCTTTTGAGT |
0.407 |
splicing
factor, arginine/serine-rich 3 |
