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Markers

BTA 1

Framework markers
Marker ID
Primer 1
Primer 2
Retention Frequency
Gene Name
 
AGLA17
AATAGACCTAGTCTGAACCGAG
GTTTAAAATTTTCTAGTAACCATGT
0.277
 
F4
BL26
TGTAAGCCACCCCTATTCCC
CTTCTTGGAGGAGGCACG
0.149
 
 
BM4307
ATAACACAAAAAGTGGAAAACACTC
ATTTTATCTCAGGTCCCTTTTTATC
0.247
 
F1
BM6438
TTGAGCACAGACACAGACTGG
ACTGAATGCCTCCTTTGTGC
0.319
 
F4
BM7145
ATTATGTTCCAGATTCCATTCCA
CAGCACTGTTTCATAAACTATGGG
0.096
 
F2
BM8139
TGCAAGGGGAAAGTCTTTATG
GACCCAGCACACTAGAAGTGG
0.223
 
 
BM8246
AATGACAAATTGAGGGAGACG
AGAGCCCAGTATCAATTCTTCC
0.16
 
F4
BM9019
TGCAGTCTCATCTGGAGGC
ACGTGACCTGGCTATCGAAC
0.17
 
 
BMS1170
AATGTCCCAATGGATTCTATTCC
GCTTGGTTTATTTAGCTCTTCTGC
0.117
 
 
BMS119
TCTGTGTTCAGGAAGCAGTTG
AGGTGTCACTTCCTTGACGC
0.106
 
 
BM1312
CCATGTGCTGCAACTCTGAC
GGAATGTTACTGAACCTCTCCG
0.181
 
 
BMS1757
TCCAGTCTTTGTTACATGCTTG
TCTTTCTCTCTCTCATAACCCG
0.287
 
 
BMS1789
CTGGAAACTGGAAACTAGTGGG
GTGAGGCATTATCAAGAAGCTG
0.191
 
 
BMS1928
TTTGCCAATCTCCAAAATTACG
CAGACATGACTTGGCACCTG
0.309
 
 
BMS1939
TTATGTGCATTCTTTTGGACTG
AAAAAAAGGAAGACTGAGGTGC
0.202
 
 
BMS2263
AACCCAGTCAACCAGCAAAG
CACCCCAGCCATCACTTC
0.174
 
 
BMS2321
TCACTTCACAAAATACACAATGC
CCAAACTCCATAATCACCACTT
0.309
 
 
BMS2572
ATGTTGCAGGCTTGTGGAG
TCGACCCGACCGTAAAAG
0.202
 
 
BMS2725
CTGGAGGATAATTGCTTTACAAA
ACCTAGAGGAGTGAGATAGACGG
0.149
 
F4
BMS4001
AGCTCTTTGCTTCCTTAAGCC
GAGGTGCTCAGAGAAGGCC
0.223
 
 
BMS4004
TTCAATGGAAAACCAATAAAGG
ATACAACCTCTCCACCTCAAAC
0.106
 
 
BMS4008
CGGCCCTAAGTGATATGTTG
GAAGAGTGTGAGGGAAAGACTG
0.161
 
F4
BMS4010
AGTGGAACCAAATAAAGAACCC
ATAGCAAAAGAATACTTCCCCC
0.149
 
 
BMS4011
TGAAGCTGACATTTCCACATG
CTTCCAGGCAACTAAATCAACC
0.202
 
 
BMS4012
TCCCTCCCTCCTTATGCAC
CGCAAGTAACCATGCCATC
0.207
 
 
BMS4013
TTATTCTACATTGCAACCCAGG
GTCGGACATGACTGAGCAAC
0.226
 
 
BMS4015
GGGTACATTGTTTTGCAGTTTG
CAGGCTATAGTCCATGAGGTTG
0.237
 
F2
BMS4017
TATTCCTGAAAGACCTCCTCAC
TGTGCATTTTTCTCTTCATCTC
0.234
 
F2
BMS4020
GAGCAGTCTGATGGGCTACA
TGCCTTCTTTTCTGTCTGCA
0.312
 
F3
BMS4021
GGGTCGCAAAGAATCAGAC
GCTAGTTGCTGAAATTGGATTC
0.16
 
F2
BMS4024
CAGGTTTAAAAACAAAGCAGAAG
CATTCCTGTCATATCTTATCTGCTC
0.191
 
 
BMS4025
CACATCACAAATCCCTGCAC
TCTTTGGATCAAACCCGAAC
0.16
 
 
BMS4028
TGGGGTTGAAAAAGAACTGG
ATAAAGCAGATGTGGTGTGTGC
0.129
 
 
BMS4030
TGTACCCAACACAGGAGCAC
TGACAGAGGGACCCATATCC
0.191
 
 
BMS4031
TCTTGCTGAACAAAGGTTCC
TCCCAGGTATTTGAAGTGTTTC
0.149
 
F5
BMS4032
CGGACACAACTGAGCAACTC
AGATGGCCAACAAACACATG
0.149
 
 
BMS4037
CCCCCATAATGCTACATATTGC
TTAAGACATGAATCCTCAGGGC
0.17
 
F5
BMS4038
GAAAGTGCCAAAAGAAATTGC
CCCATCCGTAGGTATGAAATG
0.181
 
 
BMS4039
CTGCAGCAAAAACCCAGG
GGCTGGGAAAACTGTCTGG
0.277
 
 
BMS4040
GTCCATAGGGTCACACAGAGTC
CCAAATCTTACCATAGCAAAGG
0.181
 
 
BMS4045
TTTTTATTTTGGCTATCCTTGG
ATGCCTGTAGGTTAGGAAAGTG
0.191
 
 
BMS4048
AGGTCCCTCACAAAATGGC
AGTCCCAGGTTGCTGAAATG
0.161
 
F5
BMS4050
TGCTGAAGAAAAAAAGGGAC
GTTTCAGGGCATTTAGACTCTG
0.16
 
F5
BMS4052
AGAATCTCTTCCATTCCCTGTG
CAAAAGGCAAAACAGAAATGC
0.129
 
 
BMS527
TCAGTGAAAGCAAGAGAAATATCC
TCCATTCCCTTTGAATATCCC
0.17
 
 
BMS574
ATGTTCTTTGACCACATGGATT
GAACAAGCATTCTGACCATAGC
0.29
 
 
BMS599
AGTAGGAGCTGTCTTCTGTGGC
GTCACTGGGACTTCTCTGAGC
0.17
 
 
BMS918
AGTCTTCTCTGACAGCAGTTGG
CCAGGTACCAGAGAGAGGAGA
0.17
 
 
BMS922
CCAAATCCAGCCCTTTCTC
CTCTTAGGGCAACACAACAGC
0.202
 
 
BMS948
GAACCATGTGCACCCTCTG
TCATTCAGGTCAACACACAGG
0.16
 
 
BR2724
GTAGACAGTGTTCCTGCACAGC
CCATGGGGTCTCAATCATTC
0.181
 
 
CSSM019
TTGTCAGCAACTTCTTGTATCTTT
TGTTTTAAGCCACCCAATTATTTG
0.287
 
F3
CSSM4
ATGCGTCCTAGAAACTTGAGATTG
GAAATCATCTGGTCATTATCAGTG
0.191
 
 
INRA117
GTTTCTAGTAACATATTGAC
TTAGACATGACTGAAGCAAC
0.204
 
F1
INRA212
Available on request
Available on request
0.277
 
F5
INRA250
CTACTGTCATCTCAAGCGTGCA
GCCAGGGTCCATTCGGTCCA
0.149
 
 
INRA252
CCACTCCAGTATTGCCTGGAGA
GGATCACAAAGGAATCCAACGA
0.149
 
 
LSCV99
GCACTGTTGCAGGTCGTTTC
AAGCCAGGGATGCCCAAC
0.277
 
 
MAF46
AAATACCCTATAAGGCACAGTACCAC
CACCATGGCCACCTGGAATCACG
0.181
 
F4
MCM130
AAACTTTGTGCTGTTGGGTGTATC
CTCACCTCTGCCTTTCTATCTCTCT
0.117
 
 
MILSTS80
TTCACCAACCGTTAACATCC
CTGCAACCTACTTTGGAAGG
0.245
 
F5
RM153
GGATTGCAAAGAGCTGGACATGA
GGTCTGCAGGTGGGTCCACAG
0.161
 
F3
RM326
AGAATCAGACACAACTGAAGTGAC
GCATCTCTGGGGAGCTAATAA
0.16
 
F1
SOD1MS*
CCAAAAAACCAAAACATAAA
AGGGCTACAGTCCACGGGTTG
0.269
superoxide dismutase 1
F5
TGLA130
CCAACTGGCCAGTCATAATAAATTG
GGGCCGCAAAGGGTTGGATGCA
0.16
 
F1
TGLA49
GGCAGGACTTCACTCTTTTTCA
AGAAAAGGAATAATGAGACAGATTA
0.372
 

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© Roslin Institute 2002

Dr John Williams
0131 527 4200