ChickMap Clone Details

The following clones are available for use in ChickMap studies. For more information on each clone, click on the links provided in the table. This file is sorted by clone name. It is also available sorted by cytogenetic location.

ChickMap Clones
Clone Name Clone Type Location FL-pter SD Method Contains Contact Reference
ABL1 Cosmid, Genomic micro 8-12 FISH Abelson murine leukemia viral oncogene homologue 1 R. Fries
ACC Lambda, cDNA micro FISH acetyl coA carboxylase A. Vignal
ACO1 Plasmid, Genomic Z q13-21 0.770 FISH, GL aconitase 1/iron responsive element binding protein S. Mizuno 15
ACTB cDNA 2 q32-34 ISH actin, beta D. Foster 30
ADORA1 micro FISH adenosine A1 receptor R. Fries
ADORA3 Cosmid, Genomic micro FISH adenosine A3 receptor R. Fries
AK1 Cosmid, Genomic micro 8-12 FISH, GL adenylate kinase R. Fries
ALDH Cosmid, Genomic 7 q12-13 0.620 0.057 FISH aldehyde dehydrogenase R. Fries
ALVE1 Plasmid, Genomic 1 p12-11 FISH avian leukosis viral protein A. Ponce-de-Leon
ALVE6A 1 p26 FISH
ANX2 Cosmid, Genomic micro FISH annexin II (lipocortin II) R. Fries
ASCL1 Cosmid, Genomic 1 p13-11 0.290 0.037 FISH achaete-scute complex (Drosophila) homologue like 1 R. Fries
ATP5A1 Z p24-23 FISH F1 ATP synthase alpha M. Schmid
AVD Cosmid, Genomic Z p23-21 0.160 0.030 FISH Avidin R. Fries
AVDL@ Cosmid, Genomic Z p22-21 0.180 0.020 FISH avidin related genes R. Fries
B1E7 BAC, Genomic 6 q13-14 FISH (AC) repeat A. Vignal
B2B4 BAC, Genomic 2 q11 FISH (AC) repeat A. Vignal
B5F5 micro <28 FISH A. Vignal
B6E8 BAC, Genomic micro 11-13 FISH, GL SSCP A. Vignal
B@ micro 16 FISH, GL erythrocyte alloantigen B, MHC-erythrocyte S. Bloom 37
BAC 10 BAC, Genomic 2 q11 0.450 0.030 FISH R. Fries
BAC no.10 BAC, Genomic micro terminal FISH TTAGGG , microsatellite P. Thomson
BAC no.11 BAC, Genomic micro FISH TTAGGG , microsatellite P. Thomson
BAC no.12 BAC, Genomic micro FISH TTAGGG P. Thomson
BAC no.13 BAC, Genomic 1 q36 (+2q) 0.890 0.020 FISH TTAGGG , microsatellite P. Thomson
BAC no.15 BAC, Genomic micro FISH TTAGGG P. Thomson
BAC no.19 BAC, Genomic Z and 5 FISH TTAGGG P. Thomson
BAC no.2 BAC, Genomic 1 q36 0.880 0.050 FISH TTAGGG , microsatellite P. Thomson
BAC no.20 BAC, Genomic micro terminal FISH TTAGGG , microsatellite P. Thomson
BAC no.22 BAC, Genomic 1 q36 0.890 0.020 FISH TTAGGG , microsatellite P. Thomson
BAC no.23 BAC, Genomic 4q+micro FISH TTAGGG , microsatellite P. Thomson
BAC no.24 BAC, Genomic Z p11-q11 0.650 0.030 FISH TTAGGG , microsatellite P. Thomson
BAC no.25 BAC, Genomic 1 q21-22 0.660 0.030 FISH TTAGGG , microsatellite P. Thomson
BAC no.26 BAC, Genomic micro FISH TTAGGG , microsatellite P. Thomson
BAC no.27 BAC, Genomic micro terminal FISH TTAGGG , microsatellite P. Thomson
BAC no.28 BAC, Genomic micro FISH TTAGGG , microsatellite P. Thomson
BAC no.29 BAC, Genomic micro terminal FISH TTAGGG , microsatellite P. Thomson
BAC no.3 BAC, Genomic micro FISH TTAGGG , microsatellite P. Thomson
BAC no.30 BAC, Genomic 4 q28 FISH TTAGGG , microsatellite P. Thomson
BAC no.32 BAC, Genomic 1-4+Z FISH TTAGGG , microsatellite P. Thomson
BAC no.33 BAC, Genomic 2 q26-31 0.810 0.030 FISH TTAGGG , microsatellite P. Thomson
BAC no.39 BAC, Genomic micro terminal FISH TTAGGG , microsatellite P. Thomson
BAC no.40 BAC, Genomic micro FISH TTAGGG P. Thomson
BAC no.47 BAC, Genomic micro FISH TTAGGG P. Thomson
BAC no.48 BAC, Genomic micro FISH TTAGGG , microsatellite P. Thomson
BAC no.5 BAC, Genomic micro terminal FISH TTAGGG P. Thomson
BAC no.50 BAC, Genomic micro terminal FISH TTAGGG P. Thomson
BAC no.53 BAC, Genomic micro FISH TTAGGG , microsatellite P. Thomson
BAC no.55 BAC, Genomic micro FISH TTAGGG P. Thomson
BAC no.57 BAC, Genomic micro terminal FISH TTAGGG P. Thomson
BAC no.58 BAC, Genomic micro FISH TTAGGG , microsatellite P. Thomson
BAC no.59 BAC, Genomic micro FISH TTAGGG P. Thomson
BAC no.6 BAC, Genomic 1 q FISH TTAGGG P. Thomson
BAC no.70 BAC, Genomic micro FISH P. Thomson
BAC no.71 BAC, Genomic micro terminal FISH TTAGGG , microsatellite P. Thomson
BAC no.8 BAC, Genomic 1 q FISH TTAGGG , microsatellite P. Thomson
BAC11 BAC, Genomic micro FISH M. Groenen
BAC13 BAC, Genomic micro FISH M. Groenen
BAC14 BAC, Genomic micro FISH M. Groenen
BAC3 BAC, Genomic micro FISH M. Groenen
BAC4 BAC, Genomic 1 q43 FISH M. Groenen
BAC5 BAC, Genomic 1 p26 FISH M. Groenen
BAC7 BAC, Genomic micro FISH M. Groenen
BAC8 BAC, Genomic 5 p11 FISH M. Groenen
BBC1 Cosmid, Genomic micro 10-15 FISH breast basic conserved gene 1 R. Fries
BMP7 Cosmid, Genomic micro 10-15 FISH bone morphogenic protein 7 (osteogenic protein 1) R. Fries
BRM Z p12 FISH Homologue of Drosophila Brahma gene M. Schmid
CAMLG Cosmid, Genomic micro 11-13 FISH calcium-modulating cyclophilin ligand R. Fries
CCNC Cosmid, Genomic 3 q28-29 0.630 0.032 FISH cyclin C J. Smith
CCND1 Cosmid, Genomic 5 q12 0.360 0.051 FISH Cyclin D1 J. Smith
CCND2 Cosmid, Genomic 1 p11-q11 0.360 0.045 FISH Cyclin D2 J. Smith Li et al., 1995
CCND2P Cosmid, Genomic 1 p11-q11 0.390 0.051 FISH cyclinD2 pseudogene J. Smith
CCNE Cosmid, Genomic micro 10-15 FISH cyclinE J. Smith
CD3E Cosmid, Genomic micro FISH CD3E antigen, epsilon polypeptide (TiT3 complex) R. Fries
CHD-Z cDNA Z q12-13 0.600 FISH Chromo-helicase/ATPase-DNA binding protein 1 , R. Griffiths Griffiths+Korn,1997
COS29 Cosmid, Genomic Z q11 FISH J. Smith
CRABP1 Lambda, Genomic micro 8-9 FISH Cellular retinoic acid binding protein R. Fries
Cosmid 001 Cosmid, Genomic micro 10-15 FISH J. Smith
Cosmid 003 Cosmid, Genomic 7 q13 0.580 0.053 FISH CR1 repeat J. Smith
Cosmid 004 Cosmid, Genomic 2 q23-24 0.670 0.025 FISH J. Smith
Cosmid 005 Cosmid, Genomic 1,2 chim FISH J. Smith
Cosmid 006 Cosmid, Genomic 4 p13-12 0.080 0.018 FISH J. Smith
Cosmid 007 Cosmid, Genomic micro 8-12 FISH hydroxybutyrate dehydrogenase (human) J. Smith
Cosmid 008 Cosmid, Genomic 3 q11 0.150 0.028 FISH CpG island , CR1 repeat , (CATC) repeat J. Smith
Cosmid 009 Cosmid, Genomic 7 q13-14 0.650 0.029 FISH J. Smith
Cosmid 010 Cosmid, Genomic 1 p11-q11 0.400 0.028 FISH J. Smith
Cosmid 014 Cosmid, Genomic 7 p11-q11 0.260 0.036 FISH Bovine WC1.1 antigen , CR1 repeat , CpG island J. Smith
Cosmid 016 Cosmid, Genomic 4 p13-12 0.090 0.022 FISH (TC)7 microsatellite J. Smith
Cosmid 020 Cosmid, Genomic micro 18-22 FISH CpG island , CR1 repeat , (AC)8 microsatellite , Chicken opioid binding cell adhesion molecule J. Smith
Cosmid 021 Cosmid, Genomic micro FISH CR1 repeat J. Smith
Cosmid 027 Cosmid, Genomic 5 q21-22 FISH serotonin 1D receptor , platelet activating homologue J. Smith
Cosmid 028 Cosmid, Genomic 2 p12-11 FISH TGFB receptor J. Smith
Cosmid 030 Cosmid, Genomic 3 q29-33 FISH J. Smith
Cosmid 031 Cosmid, Genomic micro FISH J. Smith
Cosmid 032 Cosmid, Genomic 8 FISH Zn finger like protein J. Smith
Cosmid 033 Cosmid, Genomic 4 p14-13 FISH J. Smith
Cosmid 034 Cosmid, Genomic 2 q32-35 FISH J. Smith
Cosmid 035 Cosmid, Genomic 2 q26-32 FISH J. Smith
Cosmid 036 Cosmid, Genomic micro FISH J. Smith
Cosmid 042 Cosmid, Genomic 1 p21-15 0.220 FISH RIP-Associated ICH1-homologous protein with a Death Domain J. Smith
Cosmid 4B Cosmid, Genomic 1 p25-24 0.090 0.026 FISH J. Smith
Cosmid 5A Cosmid, Genomic micro FISH J. Smith
D21 Cosmid, Genomic 1 chimaeric FISH R. Fries
D22 Cosmid, Genomic 1 p11-q11 0.370 0.030 FISH R. Fries
DCM11 Plasmid, micro 15-18 FISH, GL myosin, heavy chain, adult fast white (MYH1-4, MYH8 family) M. Schmid 21
DCN Plasmid, cDNA 1 p21-13 0.220 0.035 FISH Decorin R. Fries
DMD cDNA micro 10 FISH dystrophin M. Schmid 11
EGFR 2 CF epidermal growth factor receptor (c-erbB) G. Symonds 58, 59
ETS1 Cosmid, Genomic micro 8-9 FISH, GL, CF avian erythroblast virus E26 (v-ets) oncogene homologue R. Fries
FASN Cosmid, Genomic micro 16-18 FISH fatty acid synthase gene A. Vignal Pitel et al, 1996
FES micro 8-12,W CF Fujinami avian sarcoma (PCRII) viral oncogene homologue G. Symonds 59
FGF1 Lambda, Genomic micro FISH fibroblast growth factor 1 (acidic) J. Smith
FGF2 Lambda, Genomic 4 q15-16 FISH fibroblast growth factor 2 (basic) J. Smith
FLN2 Plasmid, cDNA micro 10-20 FISH filamin R. Fries
FMOD micro FISH fibromodulin R. Fries
FUT4 Plasmid, cDNA micro FISH alpha 1-3 fucosyltransferase R. Fries
GAPD 1 q11-12 FISH, GL glyceraldehyde-3-phosphate dehydrogenase N. Hutchison 62
GAS Plasmid, cDNA micro FISH gastrin gene , R. Fries
GBP Cosmid, Genomic micro 16 PL guanine nucleotide binding protein, beta related C. Auffray 61
H3F3B Cosmid, Genomic micro 10-20 FISH histone H3, family 3B R. Fries
H5 cDNA 1 p14-13 FISH, GL H5 histone, erythropoiesis-specific N. Hutchison 39, 44, 46
HBA@ micro 12-14 GL, CF haemoglobin, alpha cluster S. Hughes 57
HBB@ cDNA 1 GL, CF Haemoglobin, beta gene cluster S. Hughes 57
HCK/EV3 Cosmid, Genomic micro 10-15 FISH, GL haemopoietic-specific cell kinase, ALV provirus type 3 A. Ponce-de-Leon 55
HIS@ Lambda, Genomic 1 p FISH, GL histone, A and B gene clusters N. Hutchison 39, 44
HMG14 4 FISH, GL high mobility group protein 14 N. Hutchison 44
HMGI-c Lambda, Genomic 1 p21-13 0.220 0.034 FISH M. Groenen M. Groenen
HPRT micro SC hypoxanthine phosphoribosyltransferase 18
Huhn1 Cosmid, Genomic 4 p14-13 FISH R. Fries
Huhn2 Cosmid, Genomic 7 q11 0.420 0.121 FISH R. Fries
IFN1 Cosmid, Genomic Z P23-22 0.150 0.042 FISH Interferon , M. Schmid
IFN2 Z P22-21 FISH Interferon M. Schmid
IGF1 Lambda, Genomic 1 p12-11 0.310 FISH, GL insulin - like growth factor 1 J. Smith Klein et al., 1996
IGF1-R Plasmid, cDNA micro 10-11 FISH Insulin-like growth factor 1 receptor J. Smith 158
IGF2 Cosmid, Genomic 5 q11-12 FISH insulin-like growth factor 2 R. Fries
IL8 Cosmid, Genomic 4 q13-14 0.560 0.042 FISH interleukin 8 R. Fries
INS Cosmid, Genomic 5 q11-12 0.340 FISH Insulin J. Smith
IRF-2 Lambda, cDNA 4 q12-22 FISH Interferon regulatory facor -2 M. Schmid
KBP Plasmid, cDNA micro FISH kainate binding protein R. Fries
LMU105 Lambda, Genomic 1 p21-13 0.250 0.034 FISH M. Groenen
LYZ Cosmid, Genomic 1 p22-15 FISH, GL lysozyme J. Smith 35, 54
MAX Plasmid, Genomic 5 p11 FISH Myc binding protein M. Schmid Nanda et al., 1997
MC1R Cosmid, Genomic micro 10-15 FISH melanocortin-1 receptor R. Fries
MYB Lambda, 3 q23-25 0.460 ISH, PL, GL avian myeloblastosis viral (v-myb) oncogene homologue B. Perbal 27, 59
MYC 2 CF avian myelocytomatosis viral (v-myc) oncogene homologue G. Symonds 58, 59
NCAM Lambda, Genomic micro <24 FISH cell adhesion molecule, neural M. Schmid 21
NGFB Cosmid, Genomic micro FISH nerve growth factor, beta chain M. Schmid 19
NRAMP1 Cosmid, Genomic 7 q13 FISH natural resistance - associated macrophage protein 1 N. Bumstead Hu et al., 1996
OTC Plasmid, Genomic 1 q13-14 FISH ornithine transcarbamylase S. Tsuji
OV@ Genomic 2 q11-12 FISH, GL ovalbumin, X, Y gene cluster M. Schmid 13, 46
OVM micro 8-12,W FISH ovomucoid M. Schmid 21, 57
P1-26 BAC, Genomic micro 13-15 FISH A. Vignal
P1-8 BAC, Genomic micro 12-14 FISH PCR-RFLP A. Vignal
P10B1 PAC, Genomic micro 23-29 FISH A. Vignal
P10G12 PAC, Genomic micro 25-27 FISH (AC) repeat A. Vignal
P1A6 PAC, Genomic micro 9 FISH (AC) repeat A. Vignal
P1B6 PAC, Genomic micro FISH (AC) repeat A. Vignal
P1H8 PAC, Genomic 1 p15-13 FISH (AC) repeat A. Vignal
P1H9 PAC, Genomic 1 q14 0.570 FISH (AC) repeat A. Vignal
P2-3 BAC, Genomic micro 23-29 FISH SSCP A. Vignal
P2-4 BAC, Genomic micro 18-22 FISH SSCP A. Vignal
P2-7 BAC, Genomic micro 19-23 FISH SSCP A. Vignal
P2E4 PAC, Genomic 2 q11-12 0.530 FISH (AC) repeat A. Vignal
P3-1 BAC, Genomic micro 11-13 FISH SSCP A. Vignal
P3C6 PAC, Genomic micro 13-16 FISH (AC) repeat A. Vignal
P3D3 PAC, Genomic 3 q27-28 0.620 FISH (AC) repeat A. Vignal
P4D10 PAC, Genomic 1 p22-21 FISH A. Vignal
P4D9 PAC, Genomic 2 p33-31 FISH (AC) repeat A. Vignal
P4F6 PAC, Genomic 1 p24-22 0.130 FISH (AC) repeat A. Vignal
P4G2 PAC, Genomic 7 q16 FISH A. Vignal
P5A6 PAC, Genomic 3 p11-q11 FISH (AC) repeat A. Vignal
P5D4 PAC, Genomic 3 q28-2.10 0.680 FISH (AC) repeat A. Vignal
P5H12 PAC, Genomic micro 17-21 FISH (AC) repeat A. Vignal
P6C6 PAC, Genomic 5 q14-21 FISH (AC) repeat A. Vignal
P6D4 PAC, Genomic 1 q31-35 0.790 FISH (AC) repeat A. Vignal
P6V11 PAC, Genomic micro 12-14 FISH SSCP A. Vignal
P7E4 PAC, Genomic micro 17-21 FISH (AC) repeat A. Vignal
P7F1 PAC, Genomic 2 q21-24 FISH (AC) repeat A. Vignal
PDE6C Plasmid, Genomic micro FISH phosphodiesterase 6B, cGMP-specific, rod, beta R. Fries
PGK1 Lambda, Genomic 4 p14-11 FISH, GL phosphoglycerate kinase 1 N. Hutchison 33
PGR Cosmid, Genomic 1 q42-44 FISH progesterone receptor M. Schmid 13
PITSLRE Cosmid, Genomic micro FISH PITSLREa2 isoform - cdc2 related protein kinase V. Kidd Li et al., 1995
PPY Cosmid, Genomic micro FISH pancreatic polypeptide R. Fries
PRNP Cosmid, Genomic micro FISH Prion protein R. Fries
RAF1 micro 8-12,W CF Mill Hill 2 virus (v-mil/mht) oncogene homologue G. Symonds 58
RARB Cosmid, Genomic micro 8-10 FISH retinoic acid receptor, beta R. Fries
RFPY micro 16 FISH Rfp-Y (MHC gene region) A. Vignal Miller et al., 1996
RG5 Lambda, Genomic micro 10-11 FISH, GL beta-2-microglobulin M. Schmid 21
RNR micro 16 FISH, GL ribosomal DNA genes (nucleolar organizer) S. Bloom 37
RPL37A Cosmid, Genomic 7 q12-14 FISH intron containing ribosomal protein encoding gene L37a M. Schmid Nanda et al., 1996
RPL5 Cosmid, Genomic 8 p11-q11 FISH intron containing ribosomal protein encoding gene L5 M. Schmid Nanda et al., 1996
RPL7A Cosmid, Genomic micro 8-12 FISH intron containing ribosomal protein encoding gene L7a M. Schmid Nanda et al., 1996
SCD1 Cosmid, Genomic 6 q14 0.580 FISH stearyl coA desaturase 1 (delta 9 desaturase) A. Vignal Fillon et al., 1997
SLC6A4 Cosmid, Genomic micro FISH solute carrier family 6 (serotonin), member 4 R. Fries
SRC Cosmid, Genomic micro 8-12,W ISH, GL, CF avian sarcoma (Schmidt-Rappin A-2) viral oncogene homologue T. Padgett 57, 60
SRK 2 FISH syk-related tyrosine kinase R. Fries
SUV3 Cosmid, Genomic 6 q12 0.410 0.018 FISH J. Smith
TAX Plasmid, cDNA micro FISH Axonin R. Fries
TF Plasmid, Genomic micro 8-12,W FISH transferrin, ovotransferrin, conalbumin M. Schmid 36, 57
TGFB2 Lambda, Genomic 3 q22-23 0.230 FISH, GL transforming growth factor, beta 2 J. Smith 87
TGFB3 Lambda, Genomic 5 q21-22 FISH, GL transforming growth factor, beta3 J. Smith 63, 85
TH Cosmid, Genomic 5 q12 0.340 0.030 FISH, GL tyrosine hydroxylase R. Fries 31, 85
THRA1 micro 8-12,W CF thyroid hormone receptor, alpha (c-erbA) G. Symonds 58, 59
TK1 micro SC thymidine kinase, soluble (cytosol, F) W-C Leung
TMOD Z q16-21 FISH Tropomodulin M. Schmid
TRAF1 Genomic micro FISH TNF receptor-associated factor 1 R. Fries
TrkB Z p11 FISH Tyrosine kinase receptor M. Schmid
UCP2 Cosmid, Genomic 1 q34-41 0.890 0.010 FISH mitochondrial uncoupling protein 2 R. Fries
VLDLR Z p13 FISH Very low density lipoprotein receptor M. Schmid
ZOV3 Plasmid, Genomic Z p21 FISH immunoglobulin superfamily S. Mizuno 15
c-kit Lambda, Genomic 4 q23-24 0.740 0.045 FISH tyrosine kinase M. Groenen
c19-12 micro <28 FISH A. Vignal
cB17 micro 16 FISH A. Vignal

Table generated at 13:33:17 on 01 March 99


This file was generated automatically from a FoxPro database developed by Andy Law at the Roslin Institute. To add or change data held in this database, contact Jacqui Smith with the details. 0:59:33 on 01 March 99

This file was generated automatically from a FoxPro database developed by Andy Law at the Roslin Institute. To add or change data held in this database, contact Jacqui Smith with the details. /BODY>